Changelog • jstable

Update: TableSubgroupGLM & TableSubgroupCox allow subgroup variable with continuous.

Update *.display: univariate analysis with stats::update

Bugfix svyCreateTableOneJS in example/test.

Bugfix svycox.display

Remove dependency with group_split function (dplyr package)
Use survey::regTermTest for interaction p calculation with survey::svycoxph.

Remove dependency with car packages

Bugfix CreateTableOneJS, svyCreateTableOneJS: when with labeldata, variables other than numeric or factor types are excluded.

Bugfix TableSubgroupGLM, TableSubgroupMultiGLM: p value

Add TableSubgroupGLM, TableSubgroupMultiGLM: subgroup analysis for GLM(gaussian, logistic)

Bugfix

showpm option with showAllLevels = F when no strata.

Bugfix

TableSubgroupCox: apply extend = T option to summary.survfit
LabelepiDisplay, LabeljsTable with only 1 independent variable.

Update

CreateTableOneJS, svyCreateTableOneJS: Add showpm option to show normal distributed continuous variables as Mean ± SD.

Bugfix LabelepiDisplay, LabeljsTable: label error.

Bugfix TableSubgroupCox: error with too large time_eventrate

Bugfix TableSubgroupCox: error with factor variable including NA.
Update TableSubgroupCox: compatible with upcoming survival pacakge update.

Update svycox.display: compatible with upcoming survival pacakge update.

Bug fix

Column name fix: Run CreateTableOneJS with 2 level strata & psub = F.

Bug fix

Additional bug fix: match with survival3.1-x.
class issue: https://developer.r-project.org/Blog/public/2019/11/09/when-you-think-class.-think-again/index.html

Updates & Bug fix: match with survival3.1-x.

Updates: Non-normal variables can be summarized with [min,max].

Bug fixes: Additional incorrect P for interaction in TableSubgroupCox.

Bug fixes: Incorrect P for interaction in TableSubgroupCox.

Bug fixes: Univariate analysis in geeglm.display.

Bug fixes: Apply label information to table 1 with strata.

Update

CreateTableOneJS and svyCreateTableOneJS can get simplified table with showAllLevels = F option.

New function

TableSubgroupMultiCox: Get sub-group analysis table for forestplot with Cox/svycox model.

Update CreateTableOneJS and svyCreateTableOneJS according to tableone package(0.10.0).

Add namespace survival::cluster, survival::frailty to cox2.display

Remove 2 packages to Import: DT, epiDisplay.

Fix typo in DESCRIPTION.

Fix description text and some examples for cran release.

Change package Title for cran release.

Bug fixes

Fix some spell for cran release

Update

Update travis-ci
Add appveyor CI to test window environment
Add vignettes

Update

Add R-squared to glmshow.display

Bug fixes

svyCreateTableOne2, svyCreateTableOneJS, LabelJsTable, LabelepiDisplay and svyregress.display

Update

coefNA can be used in svyregress.display

Bug fixes

svyglm function.
Apply testhat.

Update

Auto-selection between Chi-square test and Fisher’s exact test in CreateTableOneJS, CreateTableOne2.
Table 1 for survey data: svyCreateTableOne2 and svyCreateTableOneJS are modified functions of svyCreateTableOne(tableone package).

New function: coefNA
Bug fixes: Coefficients in glmshow.display, cox2.display

Bug fixes: data.frame & cluster model issue in cox2.display

Bug fixes : duplicate variable name - glmshow.display, cox2.display, geeglm.display, coxme.display

New function

glmshow.display: table from glm.object.

Bug fixes

LabelepiDisplay: column name issue.

New function

svycox.display: table from svycoxph.object in survey package

New function

svyregress.display: table from svyglm.object in survey package

Update: cox2.display function allows data argument.
Remove jsBasicGadget : Move to jsmodule package.

Shiny gadget for descriptive statistics: jsBasicGadget
Rstudio Addin of jsBasicGadget: jsBasicAddin

Bug fixes: geeExp, lmerExp function

Bug fixes: coxExp, cox2.display function

New function

Table from coxph.object (survival package) - allow cluster & frailty options: cox2.display function
Apply label information to cox2.display: LabeljsCox function
Apply label information to geeglm.display: LabeljsGeeglm function

Bug fixes

Bug fixes: geeglm.display function

Apply label information to epiDisplay.object: LabelepiDisplay function
Apply label information to lmer.display, coxme.display: LabeljsMixed function

New function

Table from coxme.object (coxme package): coxme.display function

Bug fixes

Bug fixes: 1 variable case.

Change default page length option of opt.tb1 from 10 to 25.