Changelog • jstable

Update: Detect mixed model and show corresponding values in ‘TableSubgroupGLM’, ‘TableSubgroupMultiGLM’

fix: pairwise options in CreateTableOne2, CreateTableOneJS, svyCreateTableOne2, svyCreateTableOneJS

Update: Add event, count_by option in TableSubgroupCox, TableSubgroupMultiCox
Update: Add pairwise option in CreateTableOne2, CreateTableOneJS, svyCreateTableOne2, svyCreateTableOneJS
Update: Add labeldata option in TableSubgroupGLM, TableSubgroupMultiGLM, TableSubgroupCox, TableSubgroupMultiCox
Fix: cox2.display HR

Fix: error in TableSubgroupMultiGLM when covariates

Fix: error in forestcox when categorical binary outcome
Fix: error in forestglm when categorical covariates

Update: Add cox2.display available in fine-and-gray(competing risk), Multi-State Model (MSM)
Update: Add TableSubgroupMultiCox available in fine-and-gray(competing risk)
Fix: error in forestcox and forestglm with datatype of P value in table

Fix: error in subgroup option due to non-existent item in forestcox
Fix: Factor order error in forestcox

Fix: addOverall options to svyCreateTableOneJS
Fix: TableSubgroupCox

Update: Add weights option to TableSubgroupCox and TableSubgroupMultiCox for marginal cox model. ex: weights = "weights"
Update: Add strata option to TableSubgroupCox and TableSubgroupMultiCox for marginal cox model. ex: strata = "sex"
Fix: error in TableSubgroupMultiCox with cluster

Fix: Interaction P when 3 or more categorical subgroups in TableSubgroupCox and TableSubgroupMultiCox

Add AIC metric to cox2.display.

Update: Add cluster option to TableSubgroupCox and TableSubgroupMultiCox for marginal cox model. ex: cluster = "inst"

Fix: error for multi-category independent variable in forestcox and forestglm.

Fix: error and ref. for interaction terms in svycox and svyglm.

Fix: error and ref. for interaction terms in lmer.

Fix: error about interaction terms in coxme.

Fix: ref. for interaction terms in cox2.

Fix: ref. for interaction terms in glmshow.

Add normalityTest option to CreateTableOneJS to perform the Shapiro test for all variables.

Add family ‘poisson’, ‘quasipoisson’ in glmshow.display and TableSubgroupMultiGLM
Add data mort

Bugfix TableSubgroupGLM: thanks for weisx2022

Bugfix TableSubgroupCox: thanks for ciciing

Fix: confidence interval calculation in svyglm ( thanks for cyk0315)

Add addOverall options to CreateTableOneJS and svyCreateTableOneJS to add overall column.

Bugfix mk.lev

Bugfix LabelepiDisplay: thanks for thisis05

Bugfix TableSubgroupCox: thanks for Ding-yuan Wan

Bugfix coxme.display: thanks for Cristina Ganuza Vallejo

Update: TableSubgroupGLM & TableSubgroupCox allow subgroup variable with continuous.

Update *.display: univariate analysis with stats::update

Bugfix svyCreateTableOneJS in example/test.

Bugfix svycox.display

Remove dependency with group_split function (dplyr package)
Use survey::regTermTest for interaction p calculation with survey::svycoxph.

Remove dependency with car packages

Bugfix CreateTableOneJS, svyCreateTableOneJS: when with labeldata, variables other than numeric or factor types are excluded.

Bugfix TableSubgroupGLM, TableSubgroupMultiGLM: p value

Add TableSubgroupGLM, TableSubgroupMultiGLM: subgroup analysis for GLM(gaussian, logistic)

Bugfix

showpm option with showAllLevels = F when no strata.

Bugfix

TableSubgroupCox: apply extend = T option to summary.survfit
LabelepiDisplay, LabeljsTable with only 1 independent variable.

Update

CreateTableOneJS, svyCreateTableOneJS: Add showpm option to show normal distributed continuous variables as Mean ± SD.

Bugfix LabelepiDisplay, LabeljsTable: label error.

Bugfix TableSubgroupCox: error with too large time_eventrate

Bugfix TableSubgroupCox: error with factor variable including NA.
Update TableSubgroupCox: compatible with upcoming survival pacakge update.

Update svycox.display: compatible with upcoming survival pacakge update.

Bug fix

Column name fix: Run CreateTableOneJS with 2 level strata & psub = F.

Bug fix

Additional bug fix: match with survival3.1-x.
class issue: https://developer.r-project.org/Blog/public/2019/11/09/when-you-think-class.-think-again/index.html

Updates & Bug fix: match with survival3.1-x.

Updates: Non-normal variables can be summarized with [min,max].

Bug fixes: Additional incorrect P for interaction in TableSubgroupCox.

Bug fixes: Incorrect P for interaction in TableSubgroupCox.

Bug fixes: Univariate analysis in geeglm.display.

Bug fixes: Apply label information to table 1 with strata.

Update

CreateTableOneJS and svyCreateTableOneJS can get simplified table with showAllLevels = F option.

New function

TableSubgroupMultiCox: Get sub-group analysis table for forestplot with Cox/svycox model.

Update CreateTableOneJS and svyCreateTableOneJS according to tableone package(0.10.0).

Add namespace survival::cluster, survival::frailty to cox2.display

Remove 2 packages to Import: DT, epiDisplay.

Fix typo in DESCRIPTION.

Fix description text and some examples for cran release.

Change package Title for cran release.

Bug fixes

Fix some spell for cran release

Update

Update travis-ci
Add appveyor CI to test window environment
Add vignettes

Update

Add R-squared to glmshow.display

Bug fixes

svyCreateTableOne2, svyCreateTableOneJS, LabelJsTable, LabelepiDisplay and svyregress.display

Update

coefNA can be used in svyregress.display

Bug fixes

svyglm function.
Apply testhat.

Update

Auto-selection between Chi-square test and Fisher’s exact test in CreateTableOneJS, CreateTableOne2.
Table 1 for survey data: svyCreateTableOne2 and svyCreateTableOneJS are modified functions of svyCreateTableOne(tableone package).

New function: coefNA
Bug fixes: Coefficients in glmshow.display, cox2.display

Bug fixes: data.frame & cluster model issue in cox2.display

Bug fixes : duplicate variable name - glmshow.display, cox2.display, geeglm.display, coxme.display

New function

glmshow.display: table from glm.object.

Bug fixes

LabelepiDisplay: column name issue.

New function

svycox.display: table from svycoxph.object in survey package

New function

svyregress.display: table from svyglm.object in survey package

Update: cox2.display function allows data argument.
Remove jsBasicGadget : Move to jsmodule package.

Shiny gadget for descriptive statistics: jsBasicGadget
Rstudio Addin of jsBasicGadget: jsBasicAddin

Bug fixes: geeExp, lmerExp function

Bug fixes: coxExp, cox2.display function

New function

Table from coxph.object (survival package) - allow cluster & frailty options: cox2.display function
Apply label information to cox2.display: LabeljsCox function
Apply label information to geeglm.display: LabeljsGeeglm function

Bug fixes

Bug fixes: geeglm.display function

Apply label information to epiDisplay.object: LabelepiDisplay function
Apply label information to lmer.display, coxme.display: LabeljsMixed function

New function

Table from coxme.object (coxme package): coxme.display function

Bug fixes

Bug fixes: 1 variable case.

Change default page length option of opt.tb1 from 10 to 25.