LabeljsCox: Apply label information to cox2.display object using label data

Source: R/label.R

Apply label information to cox2.display object using label data

LabeljsCox(obj, ref)

Arguments

obj

cox2.display object
ref

Label data made by mk.lev function

Value

cox2.display object with label information

Details

DETAILS

Examples

library(survival)
fit <- coxph(Surv(time, status) ~ sex + ph.ecog + ph.karno + cluster(inst),
  data = lung, model = TRUE
)
fit.table <- cox2.display(fit)
lung.label <- mk.lev(lung)
LabeljsCox(fit.table, ref = lung.label)
#> $table
#>          crude HR(95%CI)   crude P value adj. HR(95%CI)     adj. P value
#> sex      "0.6 (0.45,0.79)" "< 0.001"     "0.56 (0.44,0.72)" "< 0.001"   
#> ph.ecog  "1.6 (1.23,2.07)" "< 0.001"     "1.91 (1.22,2.98)" "0.004"     
#> ph.karno "0.98 (0.97,1)"   "0.076"       "1.01 (0.98,1.04)" "0.416"     
#> 
#> $ranef
#>         [,1] [,2] [,3] [,4]
#> cluster   NA   NA   NA   NA
#> inst      NA   NA   NA   NA
#> 
#> $metric
#>                     [,1] [,2] [,3] [,4]
#> <NA>                  NA   NA   NA   NA
#> No. of observations  225   NA   NA   NA
#> No. of events        162   NA   NA   NA
#> 
#> $caption
#> [1] "Marginal Cox model on time ('time') to event ('status') - Group inst"
#>